Pains in both knees after running

[neurospast]

If you think that your shoes might be part of the problem, Are you still using them? Did you buy them after running in the shop on a treadmill to see if you had the shoes which fits you? Every shoe and every brand will give you a different support, switching shoes/ brands can be a tricky thing but you have to change shoes (unfortunately, depending on your mileage, about every year).

[Bruce Wilson]

Sounds like you already have your answer. ITB friction syndrome is most likely with glut medius strengthening, ITB stretches, squats in a controlled manner and gradual return to activity your likely solution. Why not see a physio for a thorough assessment and to advise on the suitability of your shoes and/or the need for orthotics.